Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.
Genome size (bp): 4712337
Number of genes 4170
Oriloc predictions: Origin 34 kb Terminus 2506 kb
Worning et al., 2006: Origin 280 kb Terminus 2506 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 1876.056 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.71 kb, 2773.77 kb
Consensus predictions: Origin 34 kb Terminus 2506 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 1206 | 0 | 2510 |
| GC-skew reverse | 3104 | 0.00333 | 2489 |
| 3935 | 0.02333 | 4255 | |
| AT-skew forward | 226 | 0.02167 | 517 |
| 400 | 0.01667 | 818 | |
| 650 | 0.02333 | 1346 | |
| 1172 | 0.00167 | 2410 | |
| AT-skew reverse | 3105 | 0 | 2492 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 1206 (2509.776 kb) | leading | 0.002 |
| 1207 (2515.5245 kb) | 2078 (4712.068 kb) | lagging | -0.078 | |
| GC-skew reverse | 2079 (0 kb) | 3104 (2489.429 kb) | leading | 0.068 |
| 3105 (2491.515 kb) | 3935 (4254.546 kb) | lagging | 0 | |
| 3936 (4256.9775 kb) | 4170 (4712.068 kb) | lagging | 0.04 | |
| AT-skew forward | 1 (0 kb) | 226 (517.3305 kb) | leading | -0.195 |
| 227 (517.91 kb) | 400 (817.793 kb) | leading | -0.284 | |
| 401 (819.6145 kb) | 650 (1346.02 kb) | leading | -0.191 | |
| 651 (1346.4515 kb) | 1172 (2410.008 kb) | leading | -0.277 | |
| 1173 (2416.271 kb) | 2078 (4712.068 kb) | lagging | -0.134 | |
| AT-skew reverse | 2079 (0 kb) | 3105 (2491.515 kb) | leading | 0.137 |
| 3106 (2492.338 kb) | 4170 (4712.068 kb) | lagging | 0.248 |
More G than C on the leading strand for replication.